Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CTV-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
T cell leukemia cell line
cell type
CTV-1
transfected ivt mrna
PU.1_delA
molecule subtype
transposed, nuclear DNA

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells were treated with DNase I directly in culture medium prior to nuclear transposition procedure. ATACseq was essentially done as described (Corces et al. 2017).

Sequencing Platform

instrument_model
NextSeq 550

hg38

Number of total reads
86354558
Reads aligned (%)
98.6
Duplicates removed (%)
32.4
Number of peaks
55328 (qval < 1E-05)

hg19

Number of total reads
86354558
Reads aligned (%)
98.2
Duplicates removed (%)
32.6
Number of peaks
54988 (qval < 1E-05)

Base call quality data from DBCLS SRA