SRX6963322
GSM4113827: KO2 1; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
KP cells with Asf1a KO
cell type
KP tumor cells
strain
C57BL/6
tissue
In vitro cultured cell line

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Directly sent cells to core for ATAC seq; Performed ChIP by using commercial available ChIP kit and then sent the purified DNA sample to the core for ChIP-seq The NYU Genome Technology Center constructed the libries followed their standard protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
42348907
Reads aligned (%)
88.9
Duplicates removed (%)
45.0
Number of peaks
14196 (qval < 1E-05)

mm9

Number of total reads
42348907
Reads aligned (%)
88.8
Duplicates removed (%)
45.0
Number of peaks
14192 (qval < 1E-05)

Base call quality data from DBCLS SRA