Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
MMTV-PyMT
NA
NA

Attributes by original data submitter

Sample

source_name
PyMT_high Slug expression
cell line
MMTV-PyMT breast cancer cell line
genotype/variation
epithelial cell with high Slug expression

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
the cells were cross-linked with 1% formaldehyde for 10 min at room temperature, and formaldehyde was then inactivated by the addition of 125mM glycine. Cells were lysed, and genomic DNA sonicated to generate DNA fragments that are about 200-500bp Illumina True-Seq Lirary Prep Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
63045680
Reads aligned (%)
97.3
Duplicates removed (%)
13.3
Number of peaks
810 (qval < 1E-05)

mm9

Number of total reads
63045680
Reads aligned (%)
97.1
Duplicates removed (%)
13.3
Number of peaks
894 (qval < 1E-05)

Base call quality data from DBCLS SRA