SRX695808
GSM1499158: 416B Ctrl HA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Blood
Cell type
416B
Tissue
Blood
Lineage
cellLine
Description
myeloid progenitor cells, CD34+

Attributes by original data submitter

Sample

source_name
416B WT control
tissue
Mouse myeloid progenitor cell line
antibody
anti-HA
transfection
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
As described in Wilson et al., Cell Stem Cell. 2010 Oct 8;7(4):532-44 According to Illumina TruSeq DNA Sample Prep Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
55541842
Reads aligned (%)
0.0
Duplicates removed (%)
7.0
Number of peaks
17 (qval < 1E-05)

mm9

Number of total reads
55541842
Reads aligned (%)
0.0
Duplicates removed (%)
7.8
Number of peaks
18 (qval < 1E-05)

Base call quality data from DBCLS SRA