SRX6949237
GSM4107619: KO-DN rep2; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
NKp46- CCR6- ILC3
genotype
Nr1d1 -/-

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq were processed as per manufacturers instructions (Illumina FC-121-1030)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
46142256
Reads aligned (%)
91.1
Duplicates removed (%)
41.0
Number of peaks
27017 (qval < 1E-05)

mm9

Number of total reads
46142256
Reads aligned (%)
91.0
Duplicates removed (%)
41.2
Number of peaks
26992 (qval < 1E-05)

Base call quality data from DBCLS SRA