ChIP-Atlas: SRX6949232

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: ATAC-Seq
Antigen: ATAC-Seq

Cell type

Cell type Class: Unclassified
Cell type: Unclassified
NA: NA

Attributes by original data submitter

Sample

source_name: NKp46- CCR6- ILC3
genotype: Nr1d1 WT

Sequenced DNA Library

library_strategy: ATAC-seq
library_source: GENOMIC
library_selection: other
library_construction_protocol: ATAC-seq were processed as per manufacturers instructions (Illumina FC-121-1030)

Sequencing Platform

instrument_model: Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 69671486
Reads aligned (%): 93.6
Duplicates removed (%): 46.3
Number of peaks: 50755 (qval < 1E-05)

mm9

Number of total reads: 69671486
Reads aligned (%): 93.5
Duplicates removed (%): 46.5
Number of peaks: 50733 (qval < 1E-05)

Base call quality data from DBCLS SRA