SRX6935359
GSM4104588: NBL-S ATAC-Seq REP2; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Neural
Cell type
NBL-S
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
neuroblastoma-derived cell line
growth media
RPMI 1640, 10% FBS, 1% Penicillin/Streptomycin, 2mM L-Glutamine
cell line
NBL-S

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
N/A ATAC-libraries of biological replicates were prepared using the protocol documented here: dx.doi.org/10.17504/protocols.io.6r3hd8n

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29377657
Reads aligned (%)
53.2
Duplicates removed (%)
28.8
Number of peaks
3754 (qval < 1E-05)

hg19

Number of total reads
29377657
Reads aligned (%)
53.0
Duplicates removed (%)
28.9
Number of peaks
3671 (qval < 1E-05)

Base call quality data from DBCLS SRA