SRX6931396
MEF ICE postTAM ChIP-seq H3K56ac rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

Sample #
ICE_NGS_#5
strain
C57BL/6
dev_stage
E13.5
sex
female
tissue
Embryonic fibroblast

Sequenced DNA Library

library_name
SINCLAIR_NGS_00017
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39682689
Reads aligned (%)
0.0
Duplicates removed (%)
13.6
Number of peaks
9684 (qval < 1E-05)

mm9

Number of total reads
39682689
Reads aligned (%)
0.0
Duplicates removed (%)
13.9
Number of peaks
9689 (qval < 1E-05)

Base call quality data from DBCLS SRA