SRX6931142
GSM4103910: Netrin H3K4me3 ChIP-seq rep3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Netrin_H3K4me3
cell type
Embryonic stem cells
genotype/variation
exogenously expressing netrin-1
chip antibody
H3K4Me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq is performed as previously described (Galonska et al., Cell Stem cell 2015)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
34550055
Reads aligned (%)
99.1
Duplicates removed (%)
81.9
Number of peaks
26960 (qval < 1E-05)

mm9

Number of total reads
34550055
Reads aligned (%)
99.1
Duplicates removed (%)
82.0
Number of peaks
26919 (qval < 1E-05)

Base call quality data from DBCLS SRA