SRX6931134
GSM4103902: Netrin H3K27me3 ChIP-seq rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Netrin_H3K27me3
cell type
Embryonic stem cells
genotype/variation
exogenously expressing netrin-1
chip antibody
H3K27me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq is performed as previously described (Galonska et al., Cell Stem cell 2015)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
38674941
Reads aligned (%)
99.2
Duplicates removed (%)
92.3
Number of peaks
28 (qval < 1E-05)

mm9

Number of total reads
38674941
Reads aligned (%)
99.2
Duplicates removed (%)
92.3
Number of peaks
23 (qval < 1E-05)

Base call quality data from DBCLS SRA