SRX6902907
GSM4096331: Quadriceps myofibers, pooled inputs for daily-prednisone samples; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
Quadriceps myofibers
NA
NA

Attributes by original data submitter

Sample

source_name
D_QD_input
genotype
mdx model of DMD
treatment
daily prednisone
tissue
quadriceps myofibers
chip-seq antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Input and IP chromatin was purified using Qiagen MinElute kit. TrueSeq ChiP-seq library prep (Illumina)

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
63422637
Reads aligned (%)
97.7
Duplicates removed (%)
27.6
Number of peaks
629 (qval < 1E-05)

mm9

Number of total reads
63422637
Reads aligned (%)
97.4
Duplicates removed (%)
27.5
Number of peaks
688 (qval < 1E-05)

Base call quality data from DBCLS SRA