Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Gonad
Cell type
Spermatocytes
MeSH Description
Male germ cells derived from SPERMATOGONIA. The euploid primary spermatocytes undergo MEIOSIS and give rise to the haploid secondary spermatocytes which in turn give rise to SPERMATIDS.

Attributes by original data submitter

Sample

source_name
spermatocytes
cell type
spermatocyte
age
12 days post-partum
strain
WSB/EiJ
chip antibody
H3K4me3 (Millipore/EMD, 07-473, lot 2155413)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
47581228
Reads aligned (%)
91.8
Duplicates removed (%)
58.3
Number of peaks
63626 (qval < 1E-05)

mm9

Number of total reads
47581228
Reads aligned (%)
91.7
Duplicates removed (%)
58.3
Number of peaks
63636 (qval < 1E-05)

Base call quality data from DBCLS SRA