SRX686942
GSM1487549: ChIP-Seq H3K27ac J1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cell
strain
J1
cell type
mouse embryonic stem cell
antibody
H3K27ac (Abcam ab4729)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's instruction or cited literatures.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
67430483
Reads aligned (%)
94.7
Duplicates removed (%)
79.7
Number of peaks
12018 (qval < 1E-05)

mm9

Number of total reads
67430483
Reads aligned (%)
94.5
Duplicates removed (%)
79.8
Number of peaks
12088 (qval < 1E-05)

Base call quality data from DBCLS SRA