SRX6864862
GSM4083605: TH148 EC ATAC; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Thymus
NA
NA

Attributes by original data submitter

Sample

source_name
early cortical thymic subpopulation
donor
148
cell type
early cortical thymic subpopulation

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
DNA extraction with MinElute PCR Purification kit (Qiagen Cat#28004) Single_end sequencing 75bp was performed using Illumina NextSeq 500.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36492575
Reads aligned (%)
98.0
Duplicates removed (%)
20.1
Number of peaks
11787 (qval < 1E-05)

hg19

Number of total reads
36492575
Reads aligned (%)
97.3
Duplicates removed (%)
21.2
Number of peaks
11691 (qval < 1E-05)

Base call quality data from DBCLS SRA