SRX6864859
GSM4083602: TH149 CD34pos 1aneg 7pos ATAC; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

source_name
CD34+1a-7+ thymic subpopulation
donor
149
cell type
CD34+1a-7+ thymic subpopulation

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
DNA extraction with MinElute PCR Purification kit (Qiagen Cat#28004) Single_end sequencing 75bp was performed using Illumina NextSeq 500.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43799408
Reads aligned (%)
93.5
Duplicates removed (%)
54.7
Number of peaks
6668 (qval < 1E-05)

hg19

Number of total reads
43799408
Reads aligned (%)
93.0
Duplicates removed (%)
55.6
Number of peaks
6489 (qval < 1E-05)

Base call quality data from DBCLS SRA