Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3S28ph

Cell type

Cell type Class
Neural
Cell type
Corpus Striatum
MeSH Description
Striped GRAY MATTER and WHITE MATTER consisting of the NEOSTRIATUM and paleostriatum (GLOBUS PALLIDUS). It is located in front of and lateral to the THALAMUS in each cerebral hemisphere. The gray substance is made up of the CAUDATE NUCLEUS and the lentiform nucleus (the latter consisting of the GLOBUS PALLIDUS and PUTAMEN). The WHITE MATTER is the INTERNAL CAPSULE.

Attributes by original data submitter

Sample

source_name
unlesioned striatum, L-DOPA injected
strain
C57BL/6J
tissue
striatum
chip antibody
H3K27me3S28p (Hansen lab)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
206482894
Reads aligned (%)
79.9
Duplicates removed (%)
88.3
Number of peaks
1968 (qval < 1E-05)

mm9

Number of total reads
206482894
Reads aligned (%)
79.7
Duplicates removed (%)
88.4
Number of peaks
2461 (qval < 1E-05)

Base call quality data from DBCLS SRA