Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Uterus
Cell type
Myometrium
MeSH Description
The smooth muscle coat of the uterus, which forms the main mass of the organ.

Attributes by original data submitter

Sample

source_name
Myometrium
Stage
38-42 weeks estimated gestational age
tissue
myometrial tissue

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Chromatin samples were prepared by Active Motif Services - Factor Path assays Libraries were prepared by Active Motif Services - Factor Path assays

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
94519397
Reads aligned (%)
83.1
Duplicates removed (%)
20.0
Number of peaks
50939 (qval < 1E-05)

hg19

Number of total reads
94519397
Reads aligned (%)
82.6
Duplicates removed (%)
20.6
Number of peaks
50662 (qval < 1E-05)

Base call quality data from DBCLS SRA