Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: Myometrium
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX6857966
GSM4081677: Myometrial tissue, subject NP7 (ATAC-Seq); Homo sapiens; ATAC-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Uterus
Cell type
Myometrium
MeSH Description
The smooth muscle coat of the uterus, which forms the main mass of the organ.
Attributes by original data submitter
Sample
source_name
Myometrium
Stage
Nonpregnant at the proliferative phase
tissue
myometrial tissue
Sequenced DNA Library
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Chromatin samples were prepared by Active Motif Services - Factor Path assays Libraries were prepared by Active Motif Services - Factor Path assays
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
106353539
Reads aligned (%)
90.5
Duplicates removed (%)
13.8
Number of peaks
32267 (qval < 1E-05)
hg19
Number of total reads
106353539
Reads aligned (%)
89.8
Duplicates removed (%)
14.2
Number of peaks
31857 (qval < 1E-05)
Base call quality data from
DBCLS SRA