Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Cardiomyocytes
NA
NA

Attributes by original data submitter

Sample

source_name
invitro differentiated murine cardiomyocytes (CM7/1)
cell type
cardiomyocytes
induction
control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
total RNA was isolated using the Qiagen RNeasy Mini Kit according to manufactures recomendations; Chromatin immuno precipitation was performed as described before in Heisig J, et al. (2012) NEBNext RNAseq and ChIPseq sample preparation kit according to manufactures recomendation

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
15328934
Reads aligned (%)
51.8
Duplicates removed (%)
12.9
Number of peaks
1962 (qval < 1E-05)

mm9

Number of total reads
15328934
Reads aligned (%)
51.8
Duplicates removed (%)
13.3
Number of peaks
1990 (qval < 1E-05)

Base call quality data from DBCLS SRA