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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: Pancreatic cancer cells
ATCC
MeSH
RIKEN BRC
SRX6854368
GSM4080867: WT K27ac S1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Pancreas
Cell type
Pancreatic cancer cells
NA
NA
Attributes by original data submitter
Sample
source_name
pancreatic cancer cells
genotype/variation
wildtype
cell type
Pancreatic cancer cells
chip antibody
H3K27ac (Abcam, ab4729)
spike-in genome
Drosophila melanogaster genomic DNA
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Details in Methods section. Libraries were prepared according to the NEBNext Ultra II DNA Library Prep Kit (New England Biolabs) protocol.
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
73042100
Reads aligned (%)
97.1
Duplicates removed (%)
11.8
Number of peaks
13815 (qval < 1E-05)
mm9
Number of total reads
73042100
Reads aligned (%)
96.9
Duplicates removed (%)
11.8
Number of peaks
13854 (qval < 1E-05)
Base call quality data from
DBCLS SRA