Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4K16ac

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2 cell line
heat shock
yes
recovery
yes
antibody
H4K16ac

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were washed with PBS and crosslinked with 1% formaldehyde for 5 min. Formaldehyde was quenched with glycine and incubated for 5 min. Cells were lysed and centrifuged to isolate nuclei. Nuclei were lysed and sheared with Covaris S220 to ~300 bp fragment sizes. SDS was quenched with Triton X-100 and extract was cleared by centrifugation. For IP, 2 µg of anti-H4K16ac Ab (Millipore, 07-329) was added per 1 ml of extract and incubated over night Complexes were captured on Protein G DynaBeads and washed with Low salt, High salt, LiCl and TE buffer. Complexes were eluted with proteinase K treatment followed by over night decrosslinking at 65˚C. DNA was isolated using PCR purification kit (Quiagen). Libraries were constructed according to Bowman et al. (2012, BMC Genomics)

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

dm6

Number of total reads
21852606
Reads aligned (%)
95.1
Duplicates removed (%)
14.4
Number of peaks
2831 (qval < 1E-05)

dm3

Number of total reads
21852606
Reads aligned (%)
96.0
Duplicates removed (%)
13.8
Number of peaks
3441 (qval < 1E-05)

Base call quality data from DBCLS SRA