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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: C2C12
ATCC
MeSH
RIKEN BRC
SRX683677
C2C12 k9ac CCGTCC L007 R1 001.fastq.gz
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS
Attributes by original data submitter
Sample
breed
C3H
strain
C3H
age
NA
biomaterial_provider
ATCC
sex
NA
tissue
muscle
cell_line
C2C12
cell_type
myoblast
Sequenced DNA Library
library_name
C2C12_k9ac_CCGTCC_L007_R1_001.fastq.gz
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
12031786
Reads aligned (%)
66.9
Duplicates removed (%)
12.7
Number of peaks
17753 (qval < 1E-05)
mm9
Number of total reads
12031786
Reads aligned (%)
66.8
Duplicates removed (%)
12.9
Number of peaks
17770 (qval < 1E-05)
Base call quality data from
DBCLS SRA