GSM4073113: wt CH12+BORIS ChIP-seq with BORIS Abs Rep1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Ctcfl
Cell type
Cell type Class
Blood
Cell type
CH12
Tissue
Blood
Lineage
cellLine
Description
B-cell lymphoma (GM12878 analog)
Attributes by original data submitter
Sample
source_name
Mouse B lymphoma cell
cell line
CH12
genotype
wild type (wt)
expressed vector
wt_CH12 stably expressed BORIS from vector (of pMy-MouseCTCFbiotag-T2A-mOrange)
treatment
none
chip antibody
custom mouse monoclonal BORIS (characterized in PMID: 21659515)
mutation
wild type
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Immunoprecipitated DNA was purified with QIAquick columns (ZymaResearch). DNA concentration was assessed with a Qubit4 (ThermoFisher) and 5–10 ng was used to generate sequencing libraries using a TruSeq ChIP Sample Preparation Kit (Illumina, Inc., USA). TruSeq ChIP Sample Preparation Kit (Illumina, Inc., USA). RNA-seq libraries were prepared using either Ion Total RNA-seq v2 kit or TruSeq Stranded RNA LT Kit (Illumina).