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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
SRX6827312
H3K27me3 ChIP-seq in wt mESCs
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
strain
E14
dev_stage
cell line
sex
not applicable
tissue
Embryonic stem cells
cell_line
Embryonic stem cells
Sequenced DNA Library
library_name
H3K27me3 ChIP-seq in wt mESCs
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
20330165
Reads aligned (%)
96.2
Duplicates removed (%)
0.5
Number of peaks
187 (qval < 1E-05)
mm9
Number of total reads
20330165
Reads aligned (%)
96.2
Duplicates removed (%)
0.6
Number of peaks
216 (qval < 1E-05)
Base call quality data from
DBCLS SRA