SRX6827310
BAP1 ChIP-seq in wt mESCs rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

strain
E14
dev_stage
cell line
sex
not applicable
tissue
Embryonic stem cells
cell_line
Embryonic stem cells

Sequenced DNA Library

library_name
BAP1 ChIP-seq in wt mESCs rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16602759
Reads aligned (%)
90.0
Duplicates removed (%)
7.3
Number of peaks
6318 (qval < 1E-05)

mm9

Number of total reads
16602759
Reads aligned (%)
89.9
Duplicates removed (%)
7.3
Number of peaks
6393 (qval < 1E-05)

Base call quality data from DBCLS SRA