Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
Embryonic liver
NA
NA

Attributes by original data submitter

Sample

source_name
Primary haematopoietic/erythroid progenitor cells
strain
C57BL/6
developmental stage
e13.5
tissue
fetal liver
cell type
Primary erythroid progenitor cells isolated from fetal liver
immunophenotype
Lin- CD71:high Ter119-

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells were transposed with Tn5 transposase for ATAC-seq library preparation as described in the Methods section of the paper ATAC-seq transposed DNA was amplified using custom barcoded oligonucleotides as described in the Methods section of the paper

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
8859605
Reads aligned (%)
97.7
Duplicates removed (%)
24.8
Number of peaks
8032 (qval < 1E-05)

mm9

Number of total reads
8859605
Reads aligned (%)
97.6
Duplicates removed (%)
24.9
Number of peaks
8003 (qval < 1E-05)

Base call quality data from DBCLS SRA