Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
PolII ChIP-Seq P0.5
strain
F1 mice (C57Bl6/CBA)
age
0.5 days postnatal
genotype
Wild type
tissue
liver
chip antibody
RNA-Pol-II
chip antibody vendor
Euromedex

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
48486358
Reads aligned (%)
96.5
Duplicates removed (%)
15.1
Number of peaks
9509 (qval < 1E-05)

mm9

Number of total reads
48486358
Reads aligned (%)
96.4
Duplicates removed (%)
15.1
Number of peaks
9515 (qval < 1E-05)

Base call quality data from DBCLS SRA