Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
sgRNA transduced OT-I cells from the B16-Ova melanoma-bearing mice
strain background
B16-Ova melanoma-bearing mice
cell type
sgRNA transduced OT-I cells
genotype/variation
wild type

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
157729411
Reads aligned (%)
74.0
Duplicates removed (%)
48.5
Number of peaks
33113 (qval < 1E-05)

mm9

Number of total reads
157729411
Reads aligned (%)
74.0
Duplicates removed (%)
48.6
Number of peaks
33058 (qval < 1E-05)

Base call quality data from DBCLS SRA