Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2 cells
cell line
S2
tissue
embryo cell line
chip antibody
H3K4me2 (Millipore, 07-030, lot 122116)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
S2 cells were cross-linked for 15 min at 37℃ in 1 ml of 1% formaldehyde in PBS buffer. The cross-linking was stopped by adding Glycine to a final concentration of 0.125M. Cells were sonicated with a Bioruptor sonicator to yield genomic DNA fragments with an average size of about 200 bp. protein-DNA complexes were isolated with Lola antibody. Genomic DNA was purified with a DNA purification kit (QIAGEN). Libraries were prepared using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm6

Number of total reads
19177840
Reads aligned (%)
95.8
Duplicates removed (%)
16.7
Number of peaks
2074 (qval < 1E-05)

dm3

Number of total reads
19177840
Reads aligned (%)
96.1
Duplicates removed (%)
14.4
Number of peaks
3411 (qval < 1E-05)

Base call quality data from DBCLS SRA