Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Naive T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Naïve CD8 T cells
cell type
Naive CD8 T cells
surface marker
CD8+CD25-CD62LhiCD44low
treatment
Control

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Genomic DNAs were extracted by DNA Clean & Concentrator (Zymo). ATAC-seq libraries were constructed with 50K cells from each condition following Omni-ATAC protocol (Illumina FC-121-1031(Corces et al., 2017))

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
40006952
Reads aligned (%)
93.7
Duplicates removed (%)
17.4
Number of peaks
43456 (qval < 1E-05)

mm9

Number of total reads
40006952
Reads aligned (%)
93.5
Duplicates removed (%)
17.4
Number of peaks
43953 (qval < 1E-05)

Base call quality data from DBCLS SRA