Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Pluripotent stem cell

Cell type

ES cells

NA

NA

Sample

dev stage

embryonic

cell type

ES-E14

sex

male

sample type

stem cell

donor ID

ENCDO015AAA

age

unknown

health state

unknown

lab

Michael Snyder, Stanford

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/302689be-b110-40b6-8912-cc9d934b002e/@@download/attachment/mouse.wgEncodeSydhHist.txt extraction method: see document general protocol: https://www.encodeproject.org/documents/302689be-b110-40b6-8912-cc9d934b002e/@@download/attachment/mouse.wgEncodeSydhHist.txt

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

35268823

Reads aligned (%)

95.4

Duplicates removed (%)

27.8

Number of peaks

907 (qval < 1E-05)

mm9

Number of total reads

35268823

Reads aligned (%)

95.0

Duplicates removed (%)

27.8

Number of peaks

1031 (qval < 1E-05)