Antigen

Antigen Class

TFs and others

Antigen

TARDBP

Cell type

Cell type Class

Liver

Cell type

Hep G2

Primary Tissue

Liver

Tissue Diagnosis

Carcinoma Hepatocellular

Sample

sample_type

cell line

sex

male

dev_stage

child

age

15 year

donor ID

ENCDO000AAC

lab

Xiang-Dong Fu, UCSD

cell_line

HepG2

health state

hepatocellular carcinoma

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/e8a2fef1-580b-45ad-b29c-fffc3d527202/@@download/attachment/ChIP-seq_Protocol_for_RNA-Binding_Proteins_ENCODE_Fu_lab_RuiXiao.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

41487762

Reads aligned (%)

87.2

Duplicates removed (%)

17.4

Number of peaks

4654 (qval < 1E-05)

hg19

Number of total reads

41487762

Reads aligned (%)

86.2

Duplicates removed (%)

18.5

Number of peaks

4333 (qval < 1E-05)