SRX6777939
GSM4052375: KO-CCR6; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
NKp46- CCR6+ ILC3
genotype
Nr1d1 -/-

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq were processed as per manufacturers instructions (Illumina FC-121-1030)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
48929847
Reads aligned (%)
94.7
Duplicates removed (%)
48.6
Number of peaks
36694 (qval < 1E-05)

mm9

Number of total reads
48929847
Reads aligned (%)
94.5
Duplicates removed (%)
48.8
Number of peaks
36712 (qval < 1E-05)

Base call quality data from DBCLS SRA