SRX6777373
ATAC-seq of homo sapiens: T cells blood

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

isolate
not collected
age
not collected
biomaterial_provider
Prof. Benjamin E. Willcox, University of Birmingham, B15 2TT, UK
sex
male
tissue
Blood
cell_subtype
Vδ1+
cell_type
T cell
population
Vδ1 CD27LO
sample_type
99

Sequenced DNA Library

library_name
99
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11331317
Reads aligned (%)
91.4
Duplicates removed (%)
11.5
Number of peaks
26049 (qval < 1E-05)

hg19

Number of total reads
11331317
Reads aligned (%)
91.1
Duplicates removed (%)
11.6
Number of peaks
26065 (qval < 1E-05)

Base call quality data from DBCLS SRA