SRX6777371
ATAC-seq of homo sapiens: T cells blood

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

isolate
not collected
age
not collected
biomaterial_provider
Prof. Benjamin E. Willcox, University of Birmingham, B15 2TT, UK
sex
male
tissue
Blood
cell_subtype
CD8 Naïve
cell_type
T cell
population
CD8 Naïve
sample_type
95

Sequenced DNA Library

library_name
95
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16145665
Reads aligned (%)
91.6
Duplicates removed (%)
6.6
Number of peaks
10360 (qval < 1E-05)

hg19

Number of total reads
16145665
Reads aligned (%)
91.1
Duplicates removed (%)
6.8
Number of peaks
10268 (qval < 1E-05)

Base call quality data from DBCLS SRA