SRX6777365
ATAC-seq of homo sapiens: T cells blood

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

isolate
not collected
age
not collected
biomaterial_provider
Prof. Benjamin E. Willcox, University of Birmingham, B15 2TT, UK
sex
male
tissue
Blood
cell_subtype
CD8 EMRA
cell_type
T cell
population
CD8 EMRA
sample_type
83

Sequenced DNA Library

library_name
83
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12810586
Reads aligned (%)
89.1
Duplicates removed (%)
4.5
Number of peaks
23916 (qval < 1E-05)

hg19

Number of total reads
12810586
Reads aligned (%)
88.7
Duplicates removed (%)
4.6
Number of peaks
23912 (qval < 1E-05)

Base call quality data from DBCLS SRA