SRX6777325
ATAC-seq of homo sapiens: T cells blood

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

isolate
not collected
age
not collected
biomaterial_provider
Prof. Benjamin E. Willcox, University of Birmingham, B15 2TT, UK
sex
female
tissue
Blood
cell_subtype
Vδ1+
cell_type
T cell
population
Vδ1 CD27HI
sample_type
111

Sequenced DNA Library

library_name
111
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16267693
Reads aligned (%)
84.8
Duplicates removed (%)
9.8
Number of peaks
26605 (qval < 1E-05)

hg19

Number of total reads
16267693
Reads aligned (%)
84.5
Duplicates removed (%)
9.9
Number of peaks
26536 (qval < 1E-05)

Base call quality data from DBCLS SRA