SRX6777320
ATAC-seq of homo sapiens: T cells blood

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

isolate
not collected
age
not collected
biomaterial_provider
Prof. Benjamin E. Willcox, University of Birmingham, B15 2TT, UK
sex
female
tissue
Blood
cell_subtype
Vδ1+
cell_type
T cell
population
Vδ1 CD27LO
sample_type
101

Sequenced DNA Library

library_name
101
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11747729
Reads aligned (%)
91.6
Duplicates removed (%)
12.0
Number of peaks
26377 (qval < 1E-05)

hg19

Number of total reads
11747729
Reads aligned (%)
91.3
Duplicates removed (%)
12.0
Number of peaks
26311 (qval < 1E-05)

Base call quality data from DBCLS SRA