SRX6750743
PPARg ChIP-Seq analysis of mouse E14 embryonic stem cells differentiated to preadipocytes (day 21, rep1)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

strain
129Sv
dev_stage
blastocyst
sex
male
tissue
embryo
cell_line
E14

Sequenced DNA Library

library_name
mm_ESE14_ADD21_PPARg_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16329670
Reads aligned (%)
97.5
Duplicates removed (%)
23.0
Number of peaks
27545 (qval < 1E-05)

mm9

Number of total reads
16329670
Reads aligned (%)
97.3
Duplicates removed (%)
23.1
Number of peaks
27554 (qval < 1E-05)

Base call quality data from DBCLS SRA