Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Neural
Cell type
Neurons
NA
NA

Attributes by original data submitter

Sample

source_name
putamen
gender
male
group
control
subject id
440
cell type
neuron

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq (assay for transposase accessible chromatin) reactions were performed using Illumina Cat #FC-121-1030 Libraries amplified using the Nextera index kit (Illumina Cat #FC-121-1011). ATACseq libraries were sequenced on Hi-Seq2500 (Illumina) obtaining 50 bp paired-end reads. ATAC-seq on FACS-sorted neuronal (N) and glial (G) cell populations. All libraries were loaded onto two separate lanes of a flow cell.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
47873027
Reads aligned (%)
92.4
Duplicates removed (%)
9.7
Number of peaks
12868 (qval < 1E-05)

hg19

Number of total reads
47873027
Reads aligned (%)
91.5
Duplicates removed (%)
9.9
Number of peaks
12532 (qval < 1E-05)

Base call quality data from DBCLS SRA