Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Neural

Cell type

Cerebellum

MeSH Description

The part of brain that lies behind the BRAIN STEM in the posterior base of skull (CRANIAL FOSSA, POSTERIOR). It is also known as the "little brain" with convolutions similar to those of CEREBRAL CORTEX, inner white matter, and deep cerebellar nuclei. Its function is to coordinate voluntary movements, maintain balance, and learn motor skills.

Sample

source_name

Cerebellum

strain

C57BL/6

tissue

Cerebellum

treatment

IF16

age

3M before expt, 6M after expt

chip antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

The cerebellum was harvested, immediately flash frozen and stored at -80°C. ChIP & RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

33454132

Reads aligned (%)

98.1

Duplicates removed (%)

19.8

Number of peaks

192 (qval < 1E-05)

mm9

Number of total reads

33454132

Reads aligned (%)

98.0

Duplicates removed (%)

19.8

Number of peaks

153 (qval < 1E-05)