Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Gonad

Cell type

Testis

MeSH Description

The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Sample

source_name

B6-Prdm9CAST-KI_testis_input

strain

B6-Prdm9CAST-KI

age

12-14 days post-partum

tissue/cell type

testis

chromatin fragmentation

Sonication

chip antibody

none (input)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

KAPA hyper kit See Samples section

Sequencing Platform

instrument_model

NextSeq 500

mm10

Number of total reads

60073309

Reads aligned (%)

98.8

Duplicates removed (%)

15.6

Number of peaks

435 (qval < 1E-05)

mm9

Number of total reads

60073309

Reads aligned (%)

98.5

Duplicates removed (%)

15.5

Number of peaks

469 (qval < 1E-05)