SRX6726990
GSM4037395: chip22; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Gonad
Cell type
Male germ cells
NA
NA

Attributes by original data submitter

Sample

source_name
Hells CKO_male germ cells_ChIP-seq
strain
Hells CKO
age
12-14 days post-partum
tissue/cell type
male germ cells
chromatin fragmentation
MNase
chip antibody
H3K4me3 (Millipore/Sigma #07-473; lot: 3018770)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
KAPA hyper kit See Samples section

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
53105472
Reads aligned (%)
85.8
Duplicates removed (%)
24.2
Number of peaks
49330 (qval < 1E-05)

mm9

Number of total reads
53105472
Reads aligned (%)
85.7
Duplicates removed (%)
24.2
Number of peaks
49289 (qval < 1E-05)

Base call quality data from DBCLS SRA