SRX6726982
GSM4037387: chip11; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Gonad
Cell type
Male germ cells
NA
NA

Attributes by original data submitter

Sample

source_name
Spo11/Spo11_male germ cells_ChIP-seq
strain
Spo11/Spo11
age
12-14 days post-partum
tissue/cell type
male germ cells
chromatin fragmentation
MNase
chip antibody
H3K9ac (Active Motif #39137; lot:09811002)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
KAPA hyper kit See Samples section

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
44558223
Reads aligned (%)
90.2
Duplicates removed (%)
14.2
Number of peaks
25408 (qval < 1E-05)

mm9

Number of total reads
44558223
Reads aligned (%)
90.1
Duplicates removed (%)
14.2
Number of peaks
25410 (qval < 1E-05)

Base call quality data from DBCLS SRA