SRX6726977
GSM4037382: chip1-input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
Male germ cells
NA
NA

Attributes by original data submitter

Sample

source_name
Spo11/Spo11_male germ cells_input
strain
Spo11/Spo11
age
12-14 days post-partum
tissue/cell type
male germ cells
chromatin fragmentation
MNase
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
KAPA hyper kit See Samples section

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
45075771
Reads aligned (%)
97.8
Duplicates removed (%)
11.0
Number of peaks
188 (qval < 1E-05)

mm9

Number of total reads
45075771
Reads aligned (%)
97.7
Duplicates removed (%)
10.9
Number of peaks
184 (qval < 1E-05)

Base call quality data from DBCLS SRA