SRX6726948
GSM4037353: ATAC13; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Gonad
Cell type
Male germ cells
NA
NA

Attributes by original data submitter

Sample

source_name
B6-Prdm9CAST-KI_male germ cells_ATAC-seq
strain
B6-Prdm9CAST-KI
age
12-14 days post-partum
tissue/cell type
male germ cells

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Tn7 See Samples section

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
160865131
Reads aligned (%)
69.8
Duplicates removed (%)
35.9
Number of peaks
23093 (qval < 1E-05)

mm9

Number of total reads
160865131
Reads aligned (%)
69.8
Duplicates removed (%)
35.9
Number of peaks
23038 (qval < 1E-05)

Base call quality data from DBCLS SRA