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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: LNCAP
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX6717271
ChIP-seq of H3K27me3 in LNCaP/MYC KD 512 Rep 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
isolate
LNCaP
age
0
biomaterial_provider
Adam Sowalsky, National Cancer Institute, 37 Convent Drive, Building 37 Room 1062B, Bethesda, MD 20892
sex
male
tissue
prostate
cell_line
LNCaP
treatment
MYC knockdown construct 1
Sequenced DNA Library
library_name
A8-26-18
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
33753865
Reads aligned (%)
99.1
Duplicates removed (%)
22.8
Number of peaks
4528 (qval < 1E-05)
hg19
Number of total reads
33753865
Reads aligned (%)
99.0
Duplicates removed (%)
23.2
Number of peaks
4567 (qval < 1E-05)
Base call quality data from
DBCLS SRA