SRX6717234
ChIP-seq of RNAP2 in LNCaP/MYC KD 512 Rep 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

isolate
LNCaP
age
0
biomaterial_provider
Adam Sowalsky, National Cancer Institute, 37 Convent Drive, Building 37 Room 1062B, Bethesda, MD 20892
sex
male
tissue
prostate
cell_line
LNCaP
treatment
MYC knockdown construct 1

Sequenced DNA Library

library_name
A2-167-8
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48739361
Reads aligned (%)
99.3
Duplicates removed (%)
51.6
Number of peaks
17229 (qval < 1E-05)

hg19

Number of total reads
48739361
Reads aligned (%)
99.1
Duplicates removed (%)
52.2
Number of peaks
17088 (qval < 1E-05)

Base call quality data from DBCLS SRA