Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Embryo
Cell type
Liver hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic day 14.5 fetal liver hematopoietic stem cells
strain
B6129SF1
tissue
Fetal liver
age
Embryonic day 14.5
chip antibody
H3K27ac (ab4729, Abcam)
cell type
fetal liver hematopoietic stem cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
5 stages of hematopoietic stem and progenitor cells were sorted from mouse embryos or adult bone marrow. ChIP reactions were performed using 20,000 FACS-sorted cells. Iped and Input DNA were purified with MinElute PCR Purification Kit. Libraries were constructed using Rubicom ThruPLEX DNA-Seq Kit. Libraries were size-selected at 100-700 bp by AMPure XP beads. Libraries were quantified with KAPA qPCR and bioanalyzer prior to single-end sequencing.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
30142080
Reads aligned (%)
89.5
Duplicates removed (%)
24.9
Number of peaks
1800 (qval < 1E-05)

mm9

Number of total reads
30142080
Reads aligned (%)
89.4
Duplicates removed (%)
25.0
Number of peaks
1733 (qval < 1E-05)

Base call quality data from DBCLS SRA