Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Embryo
Cell type
Pre-hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic day 10.5 major arteries PreHSC
strain
B6129SF1
tissue
AGM
age
Embryonic day 11.5
chip antibody
H3K27me3 (07-449, Millipore)
cell type
major arteries PreHSC

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
5 stages of hematopoietic stem and progenitor cells were sorted from mouse embryos or adult bone marrow. ChIP reactions were performed using 20,000 FACS-sorted cells. Iped and Input DNA were purified with MinElute PCR Purification Kit. Libraries were constructed using Rubicom ThruPLEX DNA-Seq Kit. Libraries were size-selected at 100-700 bp by AMPure XP beads. Libraries were quantified with KAPA qPCR and bioanalyzer prior to single-end sequencing.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
27929634
Reads aligned (%)
95.9
Duplicates removed (%)
22.1
Number of peaks
520 (qval < 1E-05)

mm9

Number of total reads
27929634
Reads aligned (%)
95.6
Duplicates removed (%)
22.2
Number of peaks
543 (qval < 1E-05)

Base call quality data from DBCLS SRA